2009ApJ...701..142G

The gas-phase chemistry of water in protoplanetary disks is analyzed with a model based on X-ray heating and ionization of the disk atmosphere. Several uncertain processes appear to play critical roles in generating the column densities of warm water that are detected from disks at infrared wavelengths. The dominant factors are the reactions that form molecular hydrogen, including formation on warm grains, and the ionization and heating of the atmosphere. All of these can work together to produce a region of high water abundances in the molecular transition layer of the inner disk atmosphere, where atoms are transformed into molecules, the temperature drops from thousands to hundreds of Kelvins, and the ionization begins to be dominated by the heavy elements. Grain formation of molecular hydrogen and mechanical heating of the atmosphere can play important roles in this region and directly affect the amount of warm water in protoplanetary disk atmospheres. Thus, it may be possible to account for the existing measurements of water emission from T Tauri disks without invoking transport of water from cooler to warmer regions. The hydroxyl radical OH is underabundant in this model of disk atmospheres and requires consideration of additional production and excitation processes.